Prepare GLS calibration data using seatrack database — gls_prepare

Function to prepare GLS calibration data for use with seatrackRgls, based on GLS files in the import directory and metadata from the Sea Track database.

Usage

gls_prepare_calibration(
  import_directory,
  output_directory,
  species = NULL,
  colony = NULL,
  no_pos_only = TRUE,
  existing_calibration_dir = NULL,
  rerun_existing = TRUE,
  include_existing = TRUE,
  filter_plots = FALSE,
  rerun_existing_plots = FALSE
)

Arguments

import_directory: Path to the directory containing GLS files.
output_directory: Path to the directory where the prepared calibration data will be saved.
species: Species name to filter metadata. Default is NULL (no filtering).
colony: Colony name to filter metadata. Default is NULL (no filtering).
no_pos_only: Logical indicating whether to include only loggers without position data in the database. Default is TRUE.
existing_calibration_dir: Directory containing existing calibration data. Default is NULL. If provided, calibration data from this directory will be merged.
rerun_existing: Logical indicating whether to rerun calibration for loggers that already have calibration data. Default is TRUE.
include_existing: Logical indicating whether to include existing calibration data in the final output. Default is TRUE.
filter_plots: Logical indicating whether to export filter plots. Default is FALSE.

Value

None. The function saves the prepared calibration data to the specified output directory.