Package index • seatrackRmetadata

Setup functions

Functions to set up the sea track folder and paths.

get_all_locations(): Get All Locations

set_sea_track_folder(): Set the base directory for the sea track folder

start_logging(): Start logging to a file

Metdata functions

Functions to handle and process metadata sheets.

General metadata functions

get_master_import_path(): Get the path of the master import file

handle_partner_metadata(): Add partner provided metadata to the master import file

handle_returned_loggers(): Handle restarted loggers

load_master_import(): Load master import file for a given colony

load_partner_metadata(): Load partner provided metadata from an Excel file

save_master_sheet(): Save a master sheet to an Excel file.

Nonresponsive metadata functions

Functions to load and update non-responsive sheets

load_nonresponsive(): Load multiple nonresponsive logger sheets

load_nonresponsive_sheet(): Load nonresponsive logger sheet for current year This function loads the record of unresponsive loggers. If the filepath provided does not exist, it initialises new sheets.

save_nonresponsive(): Save multiple nonresponsive logger sheets to Excel files

Startup metadata functions

Functions to load and update startup sheets

add_loggers_from_startup(): Attempt to add logger from startup sheets

get_startup_paths(): Get paths to all startup Excel files

get_unfinished_session(): Find a logger's unfinished session in the master startup data frame This function finds the unfinished session for a given logger in the master startup data frame.

set_comments(): Set or append comments in the master_startup data frame

set_master_startup_value(): Set a value in a specific cell of master startup

Encounter metadata functions

Functions to load and update encounter data

append_encounter_data(): Append encounter data to the master import metadata

Field planning sheet functions

Functions to load and handle data from the field planning sheet

field_plan_check_locations(): Check and update locations in the field plan sheet

field_plan_combine_locations(): Combine duplicate locations/species in the field plan sheet

get_clean_field_plan(): Read and clean the field plan data

get_field_plan(): Read and process the field plan Excel sheet

Annual report

Appendix table createion

Functions to create and export annual report appendix tables

create_appendix_table(): Create a formatted flextable for the appendix table

export_appendix_table_excel(): Export the flextable to an Excel file with formatting

General utility functions

load_sheets_as_list(): Load specified sheets from an Excel file into a list of data frames